Method and apparatus for high-speed approximate sub-string...

Details Method and apparatus for high-speed approximate sub-string... Method and apparatus for high-speed approximate sub-string...

G - Physics

01

N

G01N 33/48 (2006.01) C12Q 1/68 (2006.01) G06F 17/30 (2006.01) G06F 19/00 (2006.01) C12N 15/00 (2006.01)

Patent

CA 2446262

The present invention provides methods and systems for performing improved implementations of the BLAST algorithm for high-speed sequence database searching, e.g., on commodity Beowulf-class parallel computing hardware. The present invention also provides methods and systems for query packing, dynamic database division, and improved hit extension.

La présente invention concerne des procédés et systèmes permettant d'améliorer les mises en oeuvre de l'algorithme BLAST pour recherche à grande vitesse de séquences dans des bases de données, notamment sur un matériel informatique parallèle de classe Beowulf. L'invention concerne également des procédés et systèmes pour le compactage des requêtes, la division dynamique des bases de données, et un renforcement de l'extension des concordances.

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