Amino acid sequence pattern matching

Details Amino acid sequence pattern matching Amino acid sequence pattern matching

G - Physics

06

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G06F 19/00 (2006.01) B01D 59/44 (2006.01) C12Q 1/68 (2006.01) C12Q 1/70 (2006.01) G01N 33/00 (2006.01) H01J 49/00 (2006.01) H01J 49/26 (2006.01)

Patent

CA 2502616

A method for locating pattern matches in amino acids by use of various and sequential filters capable of determining inner sample pattern matches, inner group pattern matches, and word matching for purposes of further analysis or data mining. Filters include the use of a scoring scheme, comparison of scan numbers versus sequence of common ions to be MS/MS, and daughter ion subtraction for obtaining pattern match candidates.

L'invention concerne une méthode permettant de localiser des correspondances de modèles dans des acides aminés par le biais de l'utilisation de divers filtres séquentiels capables de déterminer des correspondances de modèles d'échantillons internes, des correspondances de modèles de groupes internes, et de faire correspondre des mots à des fins d'analyse ou d'exploration de données. Les filtres comprennent l'utilisation d'un schéma de dénombrement, la comparaison de nombres de scannage à une séquence d'ions communs MS/MS, et une soustraction d'ions filles destinée à l'obtention de candidats de correspondances de modèles.

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